Bioinformatics

A collection of bioinformatics programs for benchmarking.

See how your system performs with this suite using the Phoronix Test Suite. It's as easy as running the phoronix-test-suite benchmark bioinformatics command..

Tests In This Suite

• Himeno Benchmark

• QMCPACK

•         Input: simple-H2O
•         Input: Li2_STO_ae
•         Input: FeCO6_b3lyp_gms
•         Input: O_ae_pyscf_UHF
•         Input: LiH_ae_MSD
•         Input: H4_ae

• Timed HMMer Search

• Timed MAFFT Alignment

• Timed MrBayes Analysis

Revision History

pts/bioinformatics-1.0.2     Mon, 18 Jan 2021 09:05:00 GMT
Update BATCH options for QMCPACK.

pts/bioinformatics-1.0.1     Wed, 08 Apr 2020 15:10:05 GMT
Add QMCPACK that was accidentally left out.

pts/bioinformatics-1.0.0     Wed, 08 Apr 2020 15:01:40 GMT
Initial commit of bioinformatics benchmarks.